Experience the Ease of Use.

Feel the Unmatched Power. 


Acquisition and Analysis


When it comes to acquisition and analysis, CellCapTure is all you need. With powerful built-in features like templates and auto-compensation tools, acquisition has never been this easy. And in the same flow cytometry software, you can analyze your experiments with post-color compensation, batch analysis, calculation sheets, custom parameters, and overlays.

 Append mode
Auto compensation tools
Post-color compensation
Batch analysis
Calculation sheets
And much more!


CellCapture Control Tubes - Flow Cytometry Analysis Software

Add Compensation Tubes in CellCapTure Flow Cytometry Software

Append Mode and Acquisition Controls for Stratedigm Flow Cytometers



Stratedigm Instrument Statuses of Instruments

Stratedigm Plates and Tubes Simultaneously in One Experiment





CellCapture’s automation features are more advanced than ever. With CellCapTure’s multi-plate record features and automated shutdown, you can now run experiments day after day. Use heat maps and simple drag-and-drop features to help you with analysis of hundreds or thousands of samples.

Repeated recording of plates
Repeated recording of experiments
Automated shutdown
Heat Map
 Patent pending Visual Protocol Designer


Data Management


When it comes to your data, this is homebase. With CellCapture’s centralized database, your experiments can be accessed anywhere without cumbersome importing and exporting.  Now all the data you’ve acquired is ready to be analyzed—anywhere you are.

 Central database on local cytometer PC
 Central database on shared server location
 Access multiple databases from the same PC
 Fully automated database backup and recovery

Compatible with FCS 3.0


Stratedigm Database Visualization

Stratedigm Data Management Libraries

Stratedigm Flow Cytometers Plate Loader Diagnostics Screenshot

Performance Tracking


Making sure your instrument is running at optimal conditions at all times is a piece of cake. That’s because our CellCapTure software takes the pulse of your instrument every second. With performance tracking metrics and automated log reporting, instrument downtime is the least of your concerns.

Built-in diagnostics
Automated log reporting
Usage reports



Request a Software Demo  Download the Latest 4.1 Software


CellCapTure 5.0

Download the Latest 5.0 Software

*** Please note that CellCapTure 5.0 only works with the latest S1000EON hardware ***

Latest Features

CellCapTure 5.0 focuses on bringing new and innovative features that streamline your cytometry workflows. Some of these new features include:

“Uber Compensation” – fully automated compensation
“Magic Gating” – automatic population identification and gating
Quick labeling of well names on plates from a spreadsheet or CSV
Pie chart coloring for multiple statistical conditions on a graphical plate view
Simple drag-and-drop plate view to the calculation sheet
Moveable quadrant vertices
Single statistic display on histograms
New split screen modes for better dual-screen support
Easily copy objects to PowerPoint
And many more!

Pie chart coloring
Sticky Corner/Moveable Quadrant Vertices

Uber Compensation


1 + 1, ease of use icon




For the first time ever, users have access to fully automated compensation. Stratedigm’s Uber Comp sets up and runs your compensation controls automatically while optimizing detector gains to minimize crosstalk and data spread.

Simply load your single color controls into Eppendorf or cluster tubes onto a Stratedigm A600 HTAS, select the colors to be compensated and click run; CellCapTure does the rest.

Other cytometers require you to:

  • Load your samples one-by-one
  • Draw your plots
  • Draw your gates
  • Adjust your voltages first to optimize sensitivity
  • Readjust them again if a previous voltage was incorrect causing large spillover values
  • Record each single color control
  • Then run your samples.

And often times your compensation values result in large data spread because of large amounts of spillover.